EGAF00004720276 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720276
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23421929
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGTC	13995	0.0	9.026041	94-95
GATCGGA	42420	0.0	8.558456	94-95
ATCGGAA	39505	0.0	8.528819	94-95
AGATCGG	47810	0.0	8.497474	94-95
CACACGT	17905	0.0	8.182187	94-95
TCGGAAG	38650	0.0	8.10315	94-95
CGTCTGA	10385	0.0	7.9795337	94-95
TAGATCG	16060	0.0	7.954178	94-95
CGGAAGA	38080	0.0	7.5821996	94-95
GCACACG	20020	0.0	7.4601088	94-95
CACGTCT	14280	0.0	7.149881	94-95
ACGTCTG	12680	0.0	6.778723	94-95
AAGATCG	16010	0.0	6.7332244	94-95
GAGATCG	18320	0.0	6.610028	94-95
CAGATCG	15620	0.0	6.1412807	94-95
AGAGCAC	34515	0.0	5.9919596	94-95
AGCACAC	29905	0.0	5.4705877	94-95
GAGCACA	35650	0.0	5.3482857	94-95
GAAGAGC	49195	0.0	5.1788974	94-95