EGAF00004720284 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720284
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20836334
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	34015	0.0	8.867172	94-95
ATCGGAA	31685	0.0	8.739704	94-95
AGATCGG	38185	0.0	8.5083475	94-95
TAGATCG	12285	0.0	8.448083	94-95
TCGGAAG	31485	0.0	8.259664	94-95
ACACGTC	11590	0.0	8.0530615	94-95
CGGAAGA	31395	0.0	7.6479073	94-95
CGTCTGA	9010	0.0	7.4332075	94-95
CACACGT	14670	0.0	6.8641644	94-95
AAGATCG	14055	0.0	6.5055165	94-95
CACGTCT	12525	0.0	6.5038176	94-95
CAGATCG	13725	0.0	6.298556	94-95
GCACACG	16775	0.0	6.271813	94-95
ACGTCTG	11140	0.0	6.097233	94-95
AGAGCAC	29000	0.0	5.781741	94-95
GAGATCG	14715	0.0	5.422892	94-95
AGCACAC	25005	0.0	5.204819	94-95
GAGCACA	29760	0.0	5.155271	94-95
GAAGAGC	41875	0.0	5.0419536	94-95