EGAF00004720285 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720285
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20836334
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCG	12910	0.0	9.071305	94-95
GTCGTGT	10180	0.0	8.867168	94-95
CGTCGTG	11200	0.0	8.823166	94-95
GATCGGA	34275	0.0	8.704851	94-95
ATCGGAA	31630	0.0	8.65923	94-95
TCGTGTA	9045	0.0	8.482875	94-95
GCGTCGT	11710	0.0	8.479466	94-95
AGATCGG	38545	0.0	8.369141	94-95
GAGCGTC	16545	0.0	8.3561325	94-95
AGAGCGT	18300	0.0	8.268705	94-95
TCGGAAG	31020	0.0	8.140304	94-95
AAGAGCG	21560	0.0	7.9990244	94-95
TAGATCG	12195	0.0	7.9864025	94-95
CGGAAGA	31510	0.0	7.5463133	94-95
CGTGTAG	8940	0.0	7.36023	94-95
CAGATCG	13855	0.0	6.8409357	94-95
AAGATCG	13565	0.0	5.8839455	94-95
GAGATCG	15165	0.0	5.811398	94-95
GTGTAGG	12550	0.0	5.7351937	94-95