FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720302

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720302
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21486800
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACGTC146350.08.1628494-95
GATCGGA407700.07.986615794-95
ATCGGAA382950.07.95082294-95
AGATCGG455700.07.72387594-95
TAGATCG146100.07.705381494-95
CGTCTGA111350.07.635875794-95
TCGGAAG374900.07.532384494-95
ACGTCTG133600.07.484135694-95
CACACGT176850.07.38624594-95
CACGTCT151900.07.25481394-95
CGGAAGA376400.07.08591994-95
GCACACG208500.07.08517194-95
GAGATCG164650.06.015065794-95
AAGATCG153200.05.999543794-95
AGAGCAC340850.05.87395194-95
CAGATCG154650.05.820433694-95
AGCACAC300550.05.30239294-95
CTAGATC94450.05.104581494-95
GAGCACA346550.05.09200694-95
GAAGAGC473300.05.007951394-95
Produced by FastQC (version 0.11.5)