FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720312

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720312
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22083113
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA460200.09.48847894-95
ACACGTC148600.09.278604594-95
TCGGAAG440850.09.14054794-95
GATCGGA498250.08.99249194-95
AGATCGG561300.08.68844694-95
CGTCTGA107900.08.64363694-95
CGGAAGA425250.08.60528894-95
TAGATCG184250.08.52659994-95
CACACGT187050.08.52583494-95
ACGTCTG129100.08.2720294-95
GCACACG210950.08.05487594-95
CACGTCT149650.07.42154794-95
CAGATCG186700.07.11818194-95
GAGATCG201100.06.8090994-95
AAGATCG180850.06.77105894-95
AGAGCAC354600.06.391310794-95
AGCACAC310450.06.10773994-95
GAAGAGC511850.05.97170794-95
GAGCACA360100.05.792834394-95
AAGAGCA475900.05.634924494-95
Produced by FastQC (version 0.11.5)