EGAF00004720328 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720328
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22431829
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	34270	0.0	8.80849	94-95
ATCGGAA	31950	0.0	8.675009	94-95
AGATCGG	38365	0.0	8.227345	94-95
ACACGTC	12000	0.0	7.99595	94-95
TCGGAAG	31455	0.0	7.9809623	94-95
CGTCTGA	9405	0.0	7.50011	94-95
TAGATCG	12530	0.0	7.4113216	94-95
CGGAAGA	31490	0.0	7.293295	94-95
CACACGT	14940	0.0	6.7085986	94-95
AAGATCG	13915	0.0	6.656583	94-95
ACGTCTG	11275	0.0	6.6564164	94-95
GCACACG	17310	0.0	6.5721645	94-95
CACGTCT	12910	0.0	6.3469167	94-95
CAGATCG	13500	0.0	5.7880473	94-95
AGAGCAC	30360	0.0	5.7733054	94-95
GAGATCG	15380	0.0	5.2504025	94-95
AGCACAC	26655	0.0	5.203603	94-95
GAGCACA	30880	0.0	5.0684834	94-95