FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22059714
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA403650.08.51157294-95
GATCGGA431250.08.44583194-95
ACACGTC146750.08.26778194-95
TAGATCG157100.08.10092894-95
AGATCGG482400.08.01296694-95
TCGGAAG395400.08.01060694-95
CACACGT183000.08.00534894-95
GCACACG211350.07.72916194-95
ACGTCTG129650.07.67339794-95
CGTCTGA108850.07.65640494-95
CGGAAGA392350.07.53428294-95
CACGTCT148450.07.48534594-95
AAGATCG160550.06.758527894-95
CAGATCG166850.06.68833294-95
AGAGCAC345250.06.01756294-95
GAGATCG179700.05.919378894-95
AGCACAC293300.05.634343694-95
GAAGAGC499550.05.394647694-95
GAGCACA347350.05.29078294-95
AAGAGCA460950.05.192217494-95
Produced by FastQC (version 0.11.5)