FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720381

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720381
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22059714
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGT149800.010.07173394-95
CGTCGTG141200.09.96160594-95
GTCGTGT125950.09.33790394-95
TCGTGTA110350.09.25845394-95
AGCGTCG168350.09.046638594-95
CGTGTAG110850.08.72370694-95
ATCGGAA403800.08.46714294-95
GATCGGA434350.08.38033394-95
AGAGCGT233450.08.1726794-95
GAGCGTC213400.08.1054994-95
AAGAGCG269700.08.00802294-95
TAGATCG150300.07.98315894-95
AGATCGG482950.07.96010394-95
TCGGAAG393700.07.93601894-95
CGGAAGA391100.07.50884294-95
AAGATCG155300.06.83877694-95
CAGATCG173350.06.63382294-95
GAGATCG180850.06.214196794-95
GTGTAGG145950.05.958257794-95
GAAGAGC495650.05.48394794-95
Produced by FastQC (version 0.11.5)