EGAF00004720396 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720396
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23135373
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	36540	0.0	8.369553	94-95
ACACGTC	13955	0.0	8.252145	94-95
GATCGGA	39380	0.0	8.163904	94-95
AGATCGG	44375	0.0	7.935198	94-95
TAGATCG	13300	0.0	7.8908825	94-95
TCGGAAG	36500	0.0	7.8648124	94-95
CGGAAGA	36615	0.0	7.684476	94-95
CGTCTGA	10475	0.0	7.344224	94-95
CACACGT	17340	0.0	7.2847977	94-95
ACGTCTG	12955	0.0	6.799727	94-95
CACGTCT	14945	0.0	6.7522416	94-95
GCACACG	20305	0.0	6.7355714	94-95
CAGATCG	15585	0.0	6.2159615	94-95
AAGATCG	14530	0.0	6.0626607	94-95
AGAGCAC	33505	0.0	5.5418153	94-95
GAGATCG	19080	0.0	5.5377913	94-95
AGCACAC	28905	0.0	5.175145	94-95
AAGAGCA	44970	0.0	5.1268578	94-95
GAAGAGC	48200	0.0	5.0246763	94-95