FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720401

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720401
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23447373
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG160300.010.46088194-95
GCGTCGT140200.010.08012794-95
TCGTGTA106850.09.71413194-95
GTCGTGT118350.09.61311994-95
CGTCGTG128700.09.375236594-95
AGAGCGT228300.09.32178794-95
GAGCGTC202950.09.24560194-95
ATCGGAA422150.09.21603794-95
TCGGAAG408650.09.01482794-95
AAGAGCG272650.08.94668294-95
CGTGTAG104700.08.82470194-95
GATCGGA452950.08.42155694-95
TAGATCG160300.08.40130394-95
AGATCGG511050.08.26352794-95
CGGAAGA393450.08.21006294-95
AAGATCG179350.06.96596794-95
CAGATCG173150.06.776438794-95
GAGATCG190100.06.33465494-95
GAAGAGC498900.05.717768794-95
GTGTAGG148350.05.619745794-95
Produced by FastQC (version 0.11.5)