EGAF00004720418 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720418
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20743541
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	31805	0.0	8.459302	94-95
GATCGGA	33885	0.0	8.255394	94-95
TCGGAAG	31050	0.0	7.8466773	94-95
ACACGTC	11840	0.0	7.6815195	94-95
AGATCGG	37725	0.0	7.5850387	94-95
CGTCTGA	8945	0.0	7.5128746	94-95
ACGTCTG	11165	0.0	7.4227824	94-95
CGGAAGA	31075	0.0	7.3360143	94-95
TAGATCG	12670	0.0	7.0845976	94-95
CACGTCT	12650	0.0	7.0582547	94-95
GCACACG	17365	0.0	6.646018	94-95
CACACGT	14590	0.0	6.526632	94-95
AAGATCG	13410	0.0	5.9499116	94-95
CAGATCG	12420	0.0	5.907952	94-95
AGAGCAC	28850	0.0	5.8440313	94-95
GAGATCG	14555	0.0	5.6449995	94-95
AGCACAC	25420	0.0	5.418168	94-95