EGAF00004720432 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720432
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21308144
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	31870	0.0	9.055377	94-95
GATCGGA	34010	0.0	8.945777	94-95
TCGGAAG	31100	0.0	8.250208	94-95
AGATCGG	38385	0.0	8.123857	94-95
ACACGTC	11075	0.0	8.008034	94-95
CGTCTGA	8515	0.0	7.8534856	94-95
CGGAAGA	30740	0.0	7.7991147	94-95
TAGATCG	12820	0.0	7.768895	94-95
CACACGT	14135	0.0	7.3816743	94-95
GCACACG	15765	0.0	7.26526	94-95
ACGTCTG	10225	0.0	7.235845	94-95
AAGATCG	13635	0.0	6.9219093	94-95
CACGTCT	12100	0.0	6.6437354	94-95
CAGATCG	13540	0.0	6.0947876	94-95
AGAGCAC	28640	0.0	5.7959285	94-95
AGCACAC	25055	0.0	5.6503835	94-95
GAGATCG	14600	0.0	5.538594	94-95
GAGCACA	29190	0.0	5.459253	94-95
GAAGAGC	42335	0.0	5.1028967	94-95