EGAF00004720444 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720444
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21243812
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	27945	0.0	8.413935	94-95
TCGGAAG	28170	0.0	8.262421	94-95
AGATCGG	33205	0.0	7.932244	94-95
GATCGGA	29585	0.0	7.9314647	94-95
TAGATCG	10705	0.0	7.4767227	94-95
ACACGTC	10780	0.0	7.2264185	94-95
CGGAAGA	28275	0.0	7.2069697	94-95
CACACGT	13755	0.0	6.578584	94-95
CGTCTGA	8060	0.0	6.3353624	94-95
GCACACG	16145	0.0	6.296131	94-95
AAGATCG	12250	0.0	6.087817	94-95
CACGTCT	11765	0.0	6.0157857	94-95
ACGTCTG	10080	0.0	5.984684	94-95
GAGATCG	14470	0.0	5.728289	94-95
CAGATCG	12140	0.0	5.55607	94-95
GAAGAGC	39455	0.0	5.026347	94-95
AGCACAC	24130	0.0	5.0098934	94-95