EGAF00004720445 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720445
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21243812
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCG	11305	0.0	9.519437	94-95
GCGTCGT	9830	0.0	9.352788	94-95
CGTCGTG	9460	0.0	8.889877	94-95
ATCGGAA	27705	0.0	8.463356	94-95
GTCGTGT	8855	0.0	8.424123	94-95
TCGTGTA	8080	0.0	8.232472	94-95
TCGGAAG	28305	0.0	8.116092	94-95
GAGCGTC	14880	0.0	8.046578	94-95
GATCGGA	29440	0.0	7.916165	94-95
AGATCGG	33120	0.0	7.911682	94-95
AGAGCGT	16080	0.0	7.6824713	94-95
AAGAGCG	19290	0.0	7.5986524	94-95
TAGATCG	10015	0.0	7.47211	94-95
CGGAAGA	28875	0.0	7.1742764	94-95
CGTGTAG	8110	0.0	7.147474	94-95
AAGATCG	12125	0.0	6.446111	94-95
CAGATCG	12905	0.0	5.817183	94-95