EGAF00004720446 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720446
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20673432
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	28985	0.0	8.857568	94-95
ATCGGAA	26975	0.0	8.786808	94-95
AGATCGG	32580	0.0	8.434209	94-95
TCGGAAG	26775	0.0	8.21379	94-95
TAGATCG	11005	0.0	8.006559	94-95
ACACGTC	9870	0.0	7.8203874	94-95
CGTCTGA	7540	0.0	7.6856494	94-95
CGGAAGA	27495	0.0	7.3076663	94-95
CACACGT	12825	0.0	7.05553	94-95
ACGTCTG	9690	0.0	7.034289	94-95
GCACACG	14900	0.0	6.8858814	94-95
CAGATCG	11575	0.0	6.2785954	94-95
CACGTCT	11035	0.0	6.2414823	94-95
AAGATCG	12240	0.0	6.0151587	92-93
AGAGCAC	25970	0.0	5.587677	94-95
GAGATCG	13450	0.0	5.5092745	94-95
AGCACAC	23140	0.0	5.0291524	94-95