EGAF00004720447 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720447
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20673432
Sequences flagged as poor quality	0
Sequence length	101
%GC	47

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGT	9625	0.0	9.725022	94-95
CGTCGTG	8910	0.0	9.465548	94-95
AGCGTCG	10870	0.0	9.463537	94-95
GATCGGA	29150	0.0	8.867179	94-95
TCGTGTA	7595	0.0	8.789692	94-95
ATCGGAA	26945	0.0	8.737569	94-95
CGTGTAG	7695	0.0	8.675467	94-95
GAGCGTC	14170	0.0	8.449983	94-95
TAGATCG	10660	0.0	8.4465065	94-95
GTCGTGT	8630	0.0	8.396227	94-95
AGATCGG	32640	0.0	8.348499	94-95
AGAGCGT	15925	0.0	8.264668	94-95
TCGGAAG	26545	0.0	8.010054	94-95
AAGAGCG	18505	0.0	7.6772766	94-95
CGGAAGA	27160	0.0	7.4438043	94-95
AAGATCG	12300	0.0	6.2386775	94-95
CAGATCG	12210	0.0	5.603642	92-93
GTGTAGG	11485	0.0	5.5850606	94-95
GAGATCG	13280	0.0	5.456283	94-95