FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720452

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720452
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20070191
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA348800.09.56538494-95
GATCGGA377800.09.25167594-95
TCGGAAG336800.08.94162494-95
AGATCGG428250.08.85946394-95
CGGAAGA328250.08.45212594-95
TAGATCG146450.08.27401594-95
ACACGTC112500.08.17831894-95
CACACGT142900.07.965147594-95
AAGATCG131000.07.620712894-95
GCACACG164150.07.59853194-95
CACGTCT117750.07.310221794-95
ACGTCTG104550.06.91768294-95
CGTCTGA85300.06.89425794-95
CAGATCG152850.06.8260994-95
GAGATCG156200.06.28498394-95
AGAGCAC296150.06.109386494-95
AGCACAC244250.05.83478394-95
AAGAGCA392700.05.59158494-95
GAAGAGC420550.05.58216194-95
GAGCACA289100.05.577577694-95
Produced by FastQC (version 0.11.5)