FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720453

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720453
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20070191
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGTG104350.010.28695894-95
AGCGTCG129600.09.65709894-95
GCGTCGT110000.09.58586494-95
ATCGGAA339250.09.53450794-95
TCGTGTA84750.09.38741794-95
GATCGGA370150.09.07220194-95
AAGAGCG218550.09.03007194-95
GTCGTGT96500.08.93347294-95
GAGCGTC165750.08.84041494-95
AGATCGG422800.08.68391494-95
TAGATCG135150.08.66307194-95
AGAGCGT181850.08.63235294-95
TCGGAAG328600.08.477571594-95
CGGAAGA329450.08.23223194-95
CGTGTAG85400.07.869905594-95
CAGATCG153500.06.838405694-95
AAGATCG129000.06.68279194-95
GAGATCG164950.06.450103394-95
GAAGAGC422300.05.36498294-95
GTGTAGG120900.05.16619194-95
Produced by FastQC (version 0.11.5)