EGAF00004720468 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720468
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	27070712
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	36200	0.0	9.91878	94-95
GATCGGA	39240	0.0	9.90078	94-95
AGATCGG	44910	0.0	9.248298	94-95
TCGGAAG	35505	0.0	8.989279	94-95
TAGATCG	13925	0.0	8.339283	94-95
CGGAAGA	36120	0.0	7.7777157	94-95
ACACGTC	12400	0.0	7.3348656	94-95
CGTCTGA	9245	0.0	7.21796	94-95
GCACACG	18690	0.0	7.039074	94-95
CAGATCG	17250	0.0	6.8419886	94-95
AAGATCG	16085	0.0	6.8208103	94-95
CACACGT	16100	0.0	6.519458	94-95
CACGTCT	13515	0.0	6.290455	94-95
GAGATCG	18670	0.0	6.2452846	94-95
ACGTCTG	11825	0.0	6.1251082	94-95
AGAGCAC	33635	0.0	5.7400303	94-95
AGCACAC	29445	0.0	5.2583694	94-95
GAAGAGC	49320	0.0	5.1182942	94-95