FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720469

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720469
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27070712
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG132450.010.20201494-95
GCGTCGT117350.09.99699594-95
ATCGGAA360100.09.8922294-95
GATCGGA391200.09.864614594-95
AGATCGG449300.09.239120594-95
CGTCGTG109100.09.22925794-95
TCGTGTA87950.08.88353294-95
TCGGAAG356350.08.75677694-95
AGAGCGT198750.08.579123594-95
GTCGTGT102400.08.557694-95
AAGAGCG237750.08.50030794-95
GAGCGTC175250.08.38799794-95
TAGATCG145750.08.29344394-95
CGGAAGA357700.07.754423694-95
CGTGTAG91100.07.48150894-95
CAGATCG178300.06.88596594-95
AAGATCG153900.06.72780694-95
GAGATCG185750.06.18788494-95
Produced by FastQC (version 0.11.5)