EGAF00004720483 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720483
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21307593
Sequences flagged as poor quality	0
Sequence length	101
%GC	47

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCGTG	9940	0.0	9.175455	94-95
AGCGTCG	11715	0.0	8.981404	94-95
GCGTCGT	10395	0.0	8.819533	94-95
TCGTGTA	8230	0.0	8.74431	94-95
GTCGTGT	9245	0.0	8.50362	94-95
GAGCGTC	15310	0.0	8.11352	94-95
AGAGCGT	17030	0.0	8.047185	94-95
GATCGGA	28930	0.0	7.947119	94-95
ATCGGAA	27200	0.0	7.6317706	94-95
AGATCGG	32285	0.0	7.5626698	94-95
CGTGTAG	8460	0.0	7.4958982	94-95
AAGAGCG	19435	0.0	7.4913263	94-95
TCGGAAG	27190	0.0	7.0580535	94-95
TAGATCG	10565	0.0	7.0140343	94-95
CGGAAGA	28070	0.0	6.9806256	94-95
CAGATCG	12145	0.0	5.788646	94-95
AAGATCG	11485	0.0	5.728377	94-95
GAGATCG	13330	0.0	5.024603	94-95