EGAF00004720485 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720485
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23576352
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGTGT	9005	0.0	9.975089	94-95
CGTCGTG	9715	0.0	9.74945	94-95
TCGTGTA	7890	0.0	9.655834	94-95
AGCGTCG	11480	0.0	9.595707	94-95
GCGTCGT	10415	0.0	9.514294	94-95
AGATCGG	34800	0.0	9.422482	94-95
GATCGGA	30605	0.0	9.402093	94-95
ATCGGAA	28460	0.0	8.962184	94-95
TAGATCG	11075	0.0	8.854343	94-95
AGAGCGT	17015	0.0	8.591946	94-95
GAGCGTC	15190	0.0	8.488972	94-95
TCGGAAG	28605	0.0	8.286913	94-95
AAGAGCG	20260	0.0	8.092358	94-95
CGGAAGA	29800	0.0	7.4018393	94-95
CGTGTAG	8330	0.0	7.2610254	94-95
AAGATCG	13130	0.0	6.7040386	94-95
CAGATCG	13690	0.0	6.5426083	94-95
GAGATCG	14840	0.0	6.0876307	94-95
ATACGCG	685	0.0024935114	5.260325	94-95