FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20949903
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG126400.09.9579894-95
GCGTCGT106600.09.31239994-95
ATCGGAA306000.09.057157594-95
GATCGGA332050.08.90447594-95
CGTCGTG100000.08.8345794-95
GAGCGTC160250.08.68444494-95
AAGAGCG210350.08.37729694-95
GTCGTGT94750.08.27136594-95
AGAGCGT179550.08.24033994-95
TAGATCG116000.08.20972994-95
TCGTGTA84700.08.18732394-95
AGATCGG372900.08.12644894-95
CGTGTAG86300.07.98049294-95
TCGGAAG297700.07.690253794-95
AAGATCG135300.07.19661994-95
CGGAAGA303100.07.0752994-95
GAGATCG148800.06.22449594-95
CAGATCG135700.06.142847594-95
GTGTAGG120550.05.57521694-95
GAAGAGC410050.05.05035894-95
Produced by FastQC (version 0.11.5)