FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21000665
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA367200.09.531994-95
GATCGGA402100.09.37099494-95
TCGGAAG357100.08.82533194-95
AGATCGG449650.08.77555494-95
TAGATCG150200.08.74652794-95
ACACGTC121350.08.5591494-95
CGGAAGA350700.08.13440294-95
CGTCTGA87600.07.60673194-95
CACACGT151950.07.584577694-95
ACGTCTG108500.07.5402494-95
GCACACG177800.07.36212494-95
CACGTCT126600.07.342571394-95
CAGATCG157200.07.01449294-95
AAGATCG148250.06.750152694-95
AGAGCAC306150.06.29726794-95
AGCACAC263350.06.069073794-95
GAGATCG169150.05.846014594-95
GAGCACA308050.05.64259194-95
GAAGAGC445400.05.6328994-95
AAGAGCA412600.05.327780794-95
Produced by FastQC (version 0.11.5)