EGAF00004720497 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720497
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20812330
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCG	13050	0.0	9.636167	94-95
CGTCGTG	10575	0.0	8.991637	94-95
GCGTCGT	11645	0.0	8.879917	94-95
TCGTGTA	8920	0.0	8.794441	94-95
GAGCGTC	16640	0.0	8.771507	94-95
GTCGTGT	10100	0.0	8.590741	94-95
GATCGGA	33380	0.0	8.431882	94-95
AGAGCGT	18285	0.0	8.385402	94-95
ATCGGAA	31015	0.0	8.346708	94-95
AGATCGG	38015	0.0	8.1104355	94-95
CGTGTAG	9070	0.0	8.0199795	94-95
AAGAGCG	21590	0.0	7.762393	94-95
TCGGAAG	30870	0.0	7.723665	94-95
TAGATCG	11465	0.0	7.630147	94-95
CGGAAGA	31670	0.0	7.325898	94-95
AAGATCG	13200	0.0	6.3931303	94-95
CAGATCG	13920	0.0	6.284457	94-95
GAGATCG	15625	0.0	5.568269	94-95
GTGTAGG	12770	0.0	5.3797994	94-95