FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20677621
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGATCG110150.08.47040394-95
GATCGGA300350.08.4260894-95
AGATCGG339300.08.32643594-95
TCGGAAG279800.08.24735294-95
ATCGGAA278350.08.02591194-95
CGGAAGA284300.07.749382594-95
CGTCTGA82150.07.658334394-95
ACACGTC109150.07.46047394-95
ACGTCTG104000.06.871145794-95
CACACGT138600.06.62893594-95
GCACACG160050.06.5266994-95
CACGTCT118750.06.15762394-95
AAGATCG120650.06.119684794-95
CAGATCG126550.05.834373594-95
GAGATCG141350.05.4922294-95
AGAGCAC266950.05.20261894-95
Produced by FastQC (version 0.11.5)