EGAF00004720517 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720517
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20677621
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGT	10470	0.0	9.146072	94-95
CGTCGTG	9910	0.0	8.895626	94-95
AGCGTCG	11835	0.0	8.854144	94-95
GTCGTGT	9275	0.0	8.454273	94-95
TCGTGTA	8070	0.0	8.450543	94-95
GATCGGA	30270	0.0	8.438637	94-95
AGATCGG	34080	0.0	8.269159	94-95
TAGATCG	10615	0.0	8.192894	94-95
CGTGTAG	8430	0.0	8.117852	94-95
ATCGGAA	27910	0.0	8.028384	94-95
TCGGAAG	28410	0.0	7.9539995	94-95
GAGCGTC	15100	0.0	7.553366	94-95
AGAGCGT	16580	0.0	7.5383706	94-95
CGGAAGA	28960	0.0	7.400895	94-95
AAGAGCG	19580	0.0	7.2935348	94-95
AAGATCG	12640	0.0	6.9179435	94-95
CAGATCG	12835	0.0	5.4797735	92-93
GTGTAGG	12415	0.0	5.2824893	94-95
GAGATCG	14710	0.0	5.023703	94-95