FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720522

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21653245
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA332250.09.69210494-95
AGATCGG379150.09.46332994-95
ATCGGAA304400.09.44066894-95
TCGGAAG298300.09.18823194-95
TAGATCG126050.08.96122494-95
CGGAAGA298200.08.4989894-95
ACACGTC99200.07.70277994-95
CAGATCG134600.07.334178494-95
GCACACG150150.07.31743594-95
CACACGT129100.07.076812394-95
CGTCTGA76350.06.993211794-95
AAGATCG138650.06.846101394-95
GAGATCG154400.06.347547594-95
ACGTCTG92750.06.31955194-95
CACGTCT105550.06.18269394-95
AGAGCAC274900.05.869990394-95
AGCACAC235750.05.48590294-95
GAAGAGC410250.05.234837594-95
GAGCACA278950.05.1467494-95
TTAGATC98200.05.098872794-95
Produced by FastQC (version 0.11.5)