EGAF00004720530 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720530
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21404494
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	30205	0.0	9.321672	94-95
ATCGGAA	28265	0.0	9.04596	94-95
AGATCGG	34245	0.0	8.748834	94-95
TAGATCG	11050	0.0	8.529355	94-95
TCGGAAG	28110	0.0	8.259732	94-95
CGGAAGA	28155	0.0	7.7659054	94-95
ACACGTC	10170	0.0	7.143129	94-95
AAGATCG	12760	0.0	6.549075	94-95
GCACACG	15225	0.0	6.455517	94-95
CACACGT	13260	0.0	6.3558383	94-95
CGTCTGA	8075	0.0	6.320973	94-95
CAGATCG	12025	0.0	6.021473	94-95
CACGTCT	11270	0.0	5.961431	94-95
GAGATCG	14660	0.0	5.538347	94-95
ACGTCTG	9840	0.0	5.52495	94-95
AGAGCAC	26830	0.0	5.3444653	94-95
AGCACAC	23605	0.0	5.068909	94-95