EGAF00004720531 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720531
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21404494
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCG	9490	0.0	9.685561	94-95
GATCGGA	26030	0.0	9.663694	94-95
CGTCGTG	7975	0.0	9.653021	94-95
GCGTCGT	8380	0.0	9.524462	94-95
ATCGGAA	24095	0.0	9.467375	94-95
AGATCGG	29560	0.0	9.128084	94-95
GAGCGTC	12655	0.0	8.7891	94-95
TCGGAAG	24825	0.0	8.701528	94-95
TAGATCG	9845	0.0	8.525594	94-95
AGAGCGT	14085	0.0	8.3172035	94-95
AAGAGCG	16940	0.0	8.298547	94-95
GTCGTGT	7635	0.0	8.228176	94-95
TCGTGTA	6740	0.0	8.098391	94-95
CGGAAGA	25440	0.0	7.6916456	94-95
CGTGTAG	7060	0.0	6.7831445	94-95
AAGATCG	11210	0.0	6.683595	94-95
CAGATCG	11485	0.0	6.0752068	94-95
GAGATCG	12910	0.0	5.9231534	94-95