EGAF00004720543 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720543
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22780450
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCG	12085	0.0	9.37653	94-95
GCGTCGT	10680	0.0	9.3644285	94-95
CGTCGTG	10110	0.0	9.257964	94-95
GATCGGA	32170	0.0	9.023823	94-95
TCGTGTA	8240	0.0	8.87961	94-95
AGATCGG	36530	0.0	8.759682	94-95
GAGCGTC	15470	0.0	8.691536	94-95
ATCGGAA	29620	0.0	8.68588	94-95
AGAGCGT	17055	0.0	8.580239	94-95
GTCGTGT	9410	0.0	8.457181	94-95
CGTGTAG	8600	0.0	8.09356	94-95
AAGAGCG	20160	0.0	8.024666	94-95
TCGGAAG	29550	0.0	7.9507704	94-95
TAGATCG	11410	0.0	7.49527	94-95
CGGAAGA	30210	0.0	7.462527	94-95
AAGATCG	13570	0.0	6.5998178	94-95
GAGATCG	15250	0.0	5.966221	94-95
CAGATCG	13690	0.0	5.7784476	94-95
GTGTAGG	12255	0.0	5.330768	94-95