FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720567

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720567
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21942482
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGTG91600.010.88921594-95
AGCGTCG112550.010.8246794-95
GCGTCGT98750.010.55772194-95
ATCGGAA321300.09.69763694-95
GATCGGA353100.09.63137194-95
AGATCGG399850.09.03983194-95
GAGCGTC148950.08.99251994-95
AAGAGCG201150.08.98477994-95
GTCGTGT84550.08.81980194-95
TCGTGTA73600.08.74448594-95
TCGGAAG305600.08.66491594-95
AGAGCGT166500.08.60093994-95
CGGAAGA308000.08.54342294-95
TAGATCG130400.08.54157594-95
CGTGTAG75650.08.03662794-95
AAGATCG138650.06.988485394-95
CAGATCG146950.06.5452894-95
GAGATCG153650.05.981652794-95
GAAGAGC412850.05.608608294-95
Produced by FastQC (version 0.11.5)