FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720578

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720578
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19635975
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA399200.09.22937794-95
ACACGTC115700.09.2067194-95
ATCGGAA365700.09.1860794-95
AGATCGG451200.08.94389594-95
TCGGAAG354950.08.6755994-95
CACGTCT119900.08.33017994-95
CGGAAGA348550.08.30397994-95
CACACGT150800.08.18075794-95
TAGATCG144250.08.17395194-95
GCACACG171400.08.06954994-95
CGTCTGA82600.07.63999594-95
ACGTCTG104400.07.567294-95
CAGATCG149650.07.27658294-95
AAGATCG154950.07.196109394-95
AGAGCAC292400.06.847886694-95
GAGATCG168350.06.66560494-95
AGCACAC252000.06.091092694-95
GAGCACA296950.05.92805394-95
AAGAGCA401900.05.80265894-95
GAAGAGC438300.05.694239694-95
Produced by FastQC (version 0.11.5)