FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720579

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720579
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19635975
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTGTA84750.010.45240894-95
CGTCGTG109000.010.3493894-95
AGCGTCG137250.010.07065894-95
GTCGTGT99850.09.7993394-95
GCGTCGT118200.09.54384494-95
GAGCGTC174150.09.25962794-95
ATCGGAA352400.09.0305994-95
GATCGGA383500.09.01660894-95
AAGAGCG231850.08.89118994-95
AGAGCGT195300.08.81623194-95
TAGATCG136100.08.81212194-95
CGTGTAG86100.08.79902894-95
AGATCGG435600.08.6687594-95
CGGAAGA338450.08.15377694-95
TCGGAAG335250.08.00491894-95
AAGATCG142300.07.27660594-95
CAGATCG154000.06.46160694-95
GAGATCG165600.05.93727694-95
GAAGAGC432050.05.47485494-95
TCGGAAA48850.05.2505794-95
Produced by FastQC (version 0.11.5)