EGAF00004720588 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720588
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20383928
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGTC	13490	0.0	8.381933	94-95
ATCGGAA	35995	0.0	8.143707	94-95
GATCGGA	38520	0.0	8.004562	94-95
TCGGAAG	35220	0.0	7.978928	94-95
AGATCGG	42555	0.0	7.826122	94-95
CACACGT	16610	0.0	7.5368547	94-95
CGTCTGA	9855	0.0	7.4722986	94-95
CGGAAGA	34995	0.0	7.3785787	94-95
CACGTCT	13915	0.0	7.3406487	94-95
GCACACG	18775	0.0	7.325677	94-95
TAGATCG	14085	0.0	7.3195105	94-95
ACGTCTG	12545	0.0	7.23339	94-95
CAGATCG	14180	0.0	6.684145	94-95
AGCACAC	27470	0.0	6.061897	94-95
AAGATCG	14105	0.0	6.029192	94-95
GAGATCG	16065	0.0	5.559763	94-95
AGAGCAC	31880	0.0	5.35747	94-95
GAGCACA	32045	0.0	5.3521233	94-95
GAAGAGC	45140	0.0	5.1782465	94-95