FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20383928
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG154700.010.01048194-95
CGTCGTG127000.09.22021194-95
GTCGTGT116850.09.04542494-95
GCGTCGT134500.09.02394194-95
TCGTGTA102550.08.54650194-95
GAGCGTC185650.08.35441294-95
ATCGGAA351800.08.26386594-95
GATCGGA379150.07.96844794-95
TCGGAAG345750.07.707762794-95
AGATCGG422500.07.70178794-95
CGTGTAG101500.07.698879794-95
AAGAGCG247900.07.62665694-95
AGAGCGT206850.07.54527892-93
TAGATCG133200.07.382335794-95
CGGAAGA344200.07.35603894-95
CAGATCG148200.06.555001394-95
AAGATCG138850.05.901614794-95
GTGTAGG133900.05.765014694-95
GAGATCG159800.05.395447794-95
GTAGGGA126400.05.31786194-95
Produced by FastQC (version 0.11.5)