FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720590

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720590
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20350774
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACGTC148650.09.50431694-95
CGTCTGA105150.08.94241494-95
ATCGGAA465050.08.84335594-95
TCGGAAG445950.08.69498694-95
CGGAAGA431000.08.64950594-95
GATCGGA501700.08.63749194-95
CACACGT181600.08.60357494-95
ACGTCTG129250.08.37728294-95
AGATCGG560150.08.34661294-95
GCACACG208250.08.28930894-95
CACGTCT149050.08.20434994-95
TAGATCG178600.08.16311394-95
CAGATCG178600.06.846910594-95
AAGATCG187300.06.80777894-95
AGAGCAC357000.06.757629494-95
AGCACAC296500.06.694998394-95
GAGATCG192850.06.624170394-95
GAAGAGC495450.06.18721694-95
AAGAGCA467050.06.11096794-95
GAGCACA353450.06.086520794-95
Produced by FastQC (version 0.11.5)