FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20073099
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA306200.09.43033894-95
AGATCGG377350.09.263226594-95
GATCGGA332100.09.23115894-95
TCGGAAG300800.09.09438994-95
TAGATCG128700.08.83803794-95
CGTCTGA78500.08.137320594-95
CGGAAGA294500.08.063313594-95
ACACGTC102450.08.0197994-95
AAGATCG135650.07.404903494-95
CAGATCG121000.07.280938694-95
ACGTCTG95250.07.204962394-95
CACGTCT109400.07.097890494-95
GAGATCG141450.06.79909294-95
CACACGT133150.06.59871694-95
GCACACG153500.06.51287294-95
AGAGCAC269200.06.042467694-95
GAGCACA269750.05.493156494-95
AGCACAC234250.05.25108594-95
GAAGAGC389050.05.24918594-95
AAGAGCA369150.05.049700794-95
Produced by FastQC (version 0.11.5)