FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720603

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720603
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20073099
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG113550.09.98265194-95
ATCGGAA307050.09.32593894-95
GAGCGTC147800.09.22894594-95
AGATCGG377250.09.20943194-95
TCGTGTA80050.09.11363694-95
GATCGGA330650.09.09152294-95
TCGGAAG300050.09.06831394-95
AGAGCGT166000.09.00444994-95
GCGTCGT99100.08.94437194-95
TAGATCG121150.08.92488594-95
GTCGTGT91700.08.70732194-95
CGTCGTG94600.08.54087594-95
AAGAGCG196850.08.41418494-95
CGTGTAG78950.08.33762394-95
CGGAAGA297050.08.06390994-95
AAGATCG134200.08.02158694-95
CAGATCG134950.06.814793694-95
GAGATCG145800.06.340254394-95
GTGTAGG114900.05.377345694-95
GAAGAGC386500.05.244621394-95
Produced by FastQC (version 0.11.5)