FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720608

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720608
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20438708
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA364750.08.25742594-95
ACACGTC137400.08.05600794-95
TCGGAAG356050.08.03223194-95
GATCGGA385100.07.765562594-95
TAGATCG140850.07.656313494-95
GCACACG193850.07.523557794-95
CACACGT167250.07.498742694-95
AGATCGG426800.07.47989694-95
ACGTCTG122650.07.475503494-95
CGTCTGA102050.07.355204694-95
CGGAAGA353150.07.217074494-95
CACGTCT140450.07.10310594-95
CAGATCG144100.06.01657894-95
AAGATCG140800.05.988890694-95
AGCACAC275050.05.96742794-95
AGAGCAC315750.05.860231494-95
GAGATCG161050.05.604585694-95
GAGCACA319900.05.30899794-95
AAGAGCA425700.05.105498394-95
GAAGAGC455400.05.054188794-95
Produced by FastQC (version 0.11.5)