FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720612

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720612
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24561126
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA368900.08.88994594-95
GATCGGA399450.08.881824594-95
AGATCGG451900.08.38170594-95
TAGATCG137550.08.2524294-95
TCGGAAG364550.08.06450394-95
ACACGTC131950.08.00874994-95
CGGAAGA370700.07.45666294-95
CGTCTGA98250.07.057718894-95
CACACGT171400.07.024431794-95
ACGTCTG124950.06.74692994-95
GCACACG198650.06.6705294-95
CAGATCG169700.06.64700294-95
CACGTCT142150.06.48184994-95
ACCGCGC60100.06.32679461
AAGATCG152900.06.290158794-95
AGAGCAC333450.06.032075494-95
GAGATCG191050.05.953913794-95
AGCACAC290800.05.41418694-95
GAGCACA345550.05.22983394-95
GAAGAGC488700.05.15083494-95
Produced by FastQC (version 0.11.5)