FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720648

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720648
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19894490
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACGTC132050.08.78079794-95
GATCGGA385250.08.45682994-95
ATCGGAA357150.08.4118194-95
AGATCGG430850.07.985549494-95
CACACGT164000.07.764149794-95
TCGGAAG351100.07.73282494-95
CGGAAGA349500.07.68681194-95
CGTCTGA97850.07.657548494-95
TAGATCG137150.07.192187394-95
CACGTCT134800.07.018534794-95
ACGTCTG119100.06.92836894-95
GCACACG188100.06.794593394-95
GAGATCG159450.06.52835194-95
CAGATCG149800.06.299915394-95
AGAGCAC307750.06.009799594-95
AAGATCG137800.05.902124494-95
GAGCACA311350.05.58998594-95
AGCACAC271400.05.25956894-95
GAAGAGC438500.05.185760594-95
AAGAGCA413800.05.04261394-95
Produced by FastQC (version 0.11.5)