FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720650

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720650
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22387358
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA362700.08.87044494-95
GATCGGA394550.08.76821394-95
TCGGAAG362200.08.33858394-95
TAGATCG139550.08.20107694-95
AGATCGG446250.08.13547494-95
ACACGTC131400.07.98694294-95
CGGAAGA361800.07.534023394-95
CGTCTGA97450.07.455782494-95
ACGTCTG122400.07.19691194-95
CACGTCT140250.07.12742894-95
CACACGT168350.06.826308394-95
GCACACG194300.06.696707794-95
AAGATCG146400.06.58473994-95
CAGATCG158800.06.11542294-95
AGAGCAC329000.05.99734194-95
GAGATCG188150.05.779917792-93
AGCACAC281650.05.58086994-95
GAGCACA333750.05.328612394-95
AAGAGCA424950.05.13489294-95