FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22387358
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG149700.09.54222194-95
GCGTCGT132500.09.13058894-95
TCGTGTA101000.09.10723294-95
CGTCGTG125600.08.96985694-95
GTCGTGT114650.08.87291994-95
GATCGGA393350.08.68309294-95
ATCGGAA364750.08.67320494-95
GAGCGTC191400.08.394629594-95
AGAGCGT210850.08.3529894-95
AGATCGG440550.08.14124594-95
CGTGTAG103650.08.14058994-95
TCGGAAG363900.08.13175294-95
TAGATCG132450.07.949660394-95
AAGAGCG251150.07.81706494-95
CGGAAGA366900.07.31379994-95
AAGATCG153100.06.30300594-95
CAGATCG169250.06.235209594-95
GAGATCG178350.05.61055494-95
GTGTAGG138250.05.518698794-95
GTAGGGA126750.05.21307194-95
Produced by FastQC (version 0.11.5)