FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720657

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720657
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22662179
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGTG120950.09.85674194-95
TCGTGTA95250.09.82351194-95
AGCGTCG152050.09.74616294-95
GCGTCGT130750.09.59020194-95
ATCGGAA387700.09.39647894-95
GTCGTGT111350.09.32023294-95
GATCGGA424700.09.0307994-95
CGTGTAG100550.08.92781594-95
AGATCGG482250.08.74593594-95
GAGCGTC189050.08.71802894-95
TCGGAAG370150.08.51390394-95
CGGAAGA380950.08.39097894-95
AAGAGCG249700.08.30292794-95
AGAGCGT210000.08.266726594-95
TAGATCG155450.07.98999494-95
AAGATCG166250.06.970977394-95
CAGATCG161800.06.78108194-95
GTGTAGG140850.06.339667394-95
GAGATCG184650.06.22488894-95
GAAGAGC473950.05.24124794-95
Produced by FastQC (version 0.11.5)