EGAF00004720662 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720662
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21928983
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	34355	0.0	8.6383915	94-95
TCGGAAG	34450	0.0	8.428495	94-95
GATCGGA	36765	0.0	8.38856	94-95
TAGATCG	12465	0.0	8.34247	94-95
AGATCGG	41720	0.0	8.280023	94-95
ACACGTC	12710	0.0	7.714669	94-95
CGGAAGA	34590	0.0	7.6187773	94-95
CGTCTGA	9515	0.0	7.360818	94-95
CACGTCT	13450	0.0	7.00779	94-95
CACACGT	15760	0.0	6.95983	94-95
GCACACG	18815	0.0	6.8518596	94-95
ACGTCTG	11770	0.0	6.83811	94-95
GAGATCG	17825	0.0	6.4066114	94-95
CAGATCG	14865	0.0	6.3726616	94-95
AAGATCG	13985	0.0	6.145524	94-95
AGAGCAC	30830	0.0	5.7987485	94-95
AGCACAC	26880	0.0	5.484982	94-95
GAGCACA	32405	0.0	5.1798863	94-95
GAAGAGC	45950	0.0	5.1151986	94-95