FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720669

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720669
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22229630
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGTG112950.09.36111294-95
GTCGTGT103950.09.120151594-95
GCGTCGT121100.09.04503894-95
AGCGTCG135950.08.84351594-95
TCGTGTA91150.08.83683394-95
ATCGGAA335550.08.7450794-95
GATCGGA359200.08.44049694-95
TCGGAAG335200.08.38560494-95
AGAGCGT192250.08.28060494-95
AGATCGG407500.08.17474294-95
AAGAGCG228900.08.12773694-95
GAGCGTC172950.07.981953694-95
TAGATCG121200.07.782901394-95
CGGAAGA335400.07.735942494-95
CGTGTAG93800.07.72592894-95
AAGATCG144150.06.395444494-95
GAGATCG166200.06.347542394-95
CAGATCG154950.06.057021694-95
GTGTAGG137500.05.460570394-95
GAAGAGC439100.05.091899494-95
Produced by FastQC (version 0.11.5)