FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21722481
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA360650.08.57205194-95
GATCGGA387000.08.55286294-95
AGATCGG437100.08.463428594-95
TCGGAAG356150.08.33367894-95
TAGATCG149000.08.27067194-95
CGGAAGA351900.08.19141894-95
ACACGTC126550.07.48635594-95
ACGTCTG119550.07.388444494-95
CGTCTGA97700.07.169471794-95
AAGATCG147450.07.14986594-95
CACGTCT138100.07.032169394-95
GCACACG182350.06.784090594-95
CACACGT156550.06.70392194-95
CAGATCG144500.06.589253494-95
GAGATCG167250.06.5021894-95
AGAGCAC313550.06.133917394-95
GAAGAGC447200.05.44760194-95
AGCACAC271150.05.22786594-95
GAGCACA318450.05.14478894-95
AAGAGCA425500.05.13948794-95
Produced by FastQC (version 0.11.5)