EGAF00004720689 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720689
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22955141
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	32610	0.0	9.253327	94-95
TCGTGTA	8380	0.0	9.15806	94-95
ATCGGAA	29880	0.0	8.961657	94-95
GTCGTGT	9725	0.0	8.893174	94-95
AGATCGG	36890	0.0	8.8560295	94-95
CGTCGTG	10275	0.0	8.764001	94-95
GCGTCGT	10940	0.0	8.687357	94-95
AGCGTCG	12250	0.0	8.592363	94-95
CGTGTAG	8795	0.0	8.266669	94-95
TCGGAAG	30025	0.0	8.253655	94-95
TAGATCG	11490	0.0	8.126761	94-95
AAGAGCG	20875	0.0	7.910488	94-95
AGAGCGT	17545	0.0	7.6920123	94-95
CGGAAGA	30990	0.0	7.2606144	94-95
GAGCGTC	15775	0.0	7.2597666	94-95
AAGATCG	13470	0.0	6.332451	94-95
CAGATCG	14115	0.0	6.160915	94-95
GAGATCG	15930	0.0	5.980997	94-95
GTGTAGG	13240	0.0	5.491341	94-95