FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720706

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720706
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22775658
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACGTC170950.08.69500794-95
ATCGGAA501850.08.57331994-95
TCGGAAG480550.08.49874194-95
CACGTCT176450.08.3028794-95
GATCGGA535900.08.19695994-95
CGTCTGA125850.08.16957594-95
ACGTCTG153850.08.11807494-95
CGGAAGA470550.08.06877294-95
TAGATCG187600.08.02455894-95
AGATCGG595100.07.808464594-95
GCACACG241100.07.602997394-95
CACACGT210000.07.496507694-95
CAGATCG195150.06.63120994-95
AGAGCAC393650.06.58080894-95
AAGATCG192500.06.37711994-95
AGCACAC336750.06.24727894-95
GAGATCG216850.06.24137394-95
GAGCACA391300.05.86788294-95
GAAGAGC554000.05.820425594-95
AAGAGCA518350.05.790135494-95
Produced by FastQC (version 0.11.5)